Scaffold Ga0211731_11720536

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11720536
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12836
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016392	Metagenome	247	Y
F017294	Metagenome / Metatranscriptome	241	Y
F052471	Metagenome	142	Y
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1172053614	F017294	AGGAG	MRVTHLNKSGTGWSSKTACGRNLLRTPISTNWSEFKQEPVQFRCIKCVTSKQFELNTKMDAKKVTA
Ga0211731_1172053620	F095169	AGGA	MNWRDLTIKYVKDLLRAKTPIEMVQKELVEAQLAKLQAETSVEYSQAIVNYNEQRIFRLYKRIRELQEFGHD
Ga0211731_1172053625	F016392	N/A	MTNAFDYKGKPSVWLTDTKMKRFKQGEEFAKKRQDKGDINEKNQVFIYSKANSKK
Ga0211731_1172053626	F052471	N/A	MIVKIRTFYGRSRGLRGERETKVDQGVAWLCQKCGEVILFEHLVSKHFCKTQIKLQVHSD