Scaffold Ga0211731_11709341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211731_11709341

Scaffold Ga0211731_11709341

Overview

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11709341 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2866
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057112	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_117093412	F057112	GGAG	MQFTAEQVWGLAVEADRINDGYLKEDLWDTAEAGVRVKTANKVLVKQWLREERQPSVEDAEKGREYRTFFNTFTLKALMGNLSDFDRQALRIAQMDEFTGKNMLEFAVISCLPSSARREQERTELKRELFTSVQLNGDIGDVIRGDIEVIGCSFSQMYNKFKVKARMGEAFVDFWFGKSFDKGATVTVQGKIKAVRGDKTTQLNFVKIKG

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