NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11649060

Scaffold Ga0211731_11649060


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11649060 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6805
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F005451Metagenome400Y
F013185Metagenome273Y
F034929Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1164906010F004670AGGAMSRMKDYLLEDLPLFRASDPETSRQVSPIRVGTHRALLLEQYSYATLGLTDEEAGMRAALAGHDIKGYWKRCSDLRTIGLIEDLGIRRAVSSGSQAIVCGITQKGMDMVRGWA
Ga0211731_1164906011F034929N/AMAQNDGQQTMIQHWGYVPLRSKDKKTLVQVFIDLNTGLIEYTQVCQRAESWHSWGLPTEVERVD
Ga0211731_1164906013F005027AGGAMETSLGELIAKLTNLSHNLALELRFKDSSLVLEAVGALQAIPTLAEKVRDSWHPSFATTGPSKGISYLSTVKFVEPEFWDTHDE
Ga0211731_116490603F013185N/AMSLATSVEITGLKQAMTELSKMDKSARFKAAAKIKASSPALLENVRAQFPADIGVTMIHGWAPSKKGGGRLAYDKAKVDKGVQIVIGGRARPGVTPLVTLVQKDAAGALFSMAGNAGGTGQFSKLLTNVFGRPQRGLWRSRAFIQEQGTADIMKAVDEVIADANRALQQRMAA
Ga0211731_116490609F005451N/AMANRVYPYYPSWDGKATQPVTSKLVELCKARWGLTSLGTYANRPMRNNAGLSVHATGYAADLKYKDETQARAIWDWFLANSKALGLCEMHWYAYGDFGAGYRCSRGEGKAGVKIFTADDNAGSYQGSPNWFHIELAKQTPEHFEQVFRALKL
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