Scaffold Ga0211731_11573490

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11573490
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3783
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F003067	Metagenome / Metatranscriptome	509	Y
F012572	Metagenome	279	N
F020906	Metagenome	221	Y
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_115734903	F020906	AGGA	MPTSAQVVVAATATIIVPATNFDQTVNLHNLGGGAIYLGGSNVTTANGYKFDNGDKLTVTVGDREALYAITATGTHTVAVLSQIN
Ga0211731_115734904	F002269	AGGAG	MNKKAITAALYSYGRAALASVAALYMSGITDPKVLANALVASLIAPLLKGLQPNEQQYGIGAK
Ga0211731_115734905	F003067	AGG	MTQAQSYVALLLGIATLSGLAAGLVRHLVKYYLSELRPDGNGGHNLRGRVDRIEARVDKIYEMLVEDRLAK
Ga0211731_115734906	F046904	AGG	MNSLDFIVLAILLGIVSLFIYAAYDWGYKVGISEGYLRGRNIAKALREHEASK
Ga0211731_115734908	F012572	AGGA	MSDRYEMINLQTMTGKLFVSGEMIAEYKVESCDKCARIMQLDKFGYQKSDPAENIIWFCKDCR