NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11436765

Scaffold Ga0211731_11436765


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11436765 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9188
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F005562Metagenome / Metatranscriptome396Y
F071244Metagenome122Y
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1143676514F084244N/AMSVNVGVEFTGLKVALGELNQLDKSLRRQITKDFKTIVQPVVQKAQTDLPSGAPLSGMARSWKTASGADIMSWQDARVKRNIKAFTNAKKVRSSPTGNLQNVGVFGIRWAGPQATIFDMAANGLLSRNLTARYGQPSRVIYKAYEAASTQVERQVQELVNRVMMLTGRQGRL
Ga0211731_1143676517F071244AGGMAYTIISDLVGKSGTEFFPAEGINIDALIWGGFIKSDKTPTKSAKTVETSPEE
Ga0211731_114367653F005027AGGAGMETSTGELIARLMNLSNQLAIELRFKESSLVLEVVGLLHSLPTVAERNRDKWHPSYNSSGASKGITYISTVKQTNE
Ga0211731_114367656F004670AGGAMSRMKDYLLEDLPLFRASDPDTSRQVNPVRVGTHRAVLLEQYFYATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTIGLIEDLGIRRALTSGSQGIVCAITAKGMDIVKGWA
Ga0211731_114367659F005562AGGMTRPNIQTDDQVREMTEAEYEALLATGWTLEGTDETPSPA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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