Scaffold Ga0211731_11340748

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211731_11340748

Scaffold Ga0211731_11340748

Overview

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11340748 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3737
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017592	Metagenome	239	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1134074811	F085065	N/A	MSKQELLMLLKLLSAIESAMSVNKAQLPSYLFEQIDVAVVVLEREILK
Ga0211731_1134074812	F017592	AGGAG	MDDGDYSTVDEVMHYVTIFVLFLMTIVFLGMLAGLLWAMI

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