NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211731_11308214

Scaffold Ga0211731_11308214


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11308214 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5068
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F035768Metagenome / Metatranscriptome171Y
F039639Metagenome / Metatranscriptome163Y
F039640Metagenome / Metatranscriptome163Y
F062765Metagenome / Metatranscriptome130Y
F081346Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1130821411F062765GGAMGWYRTRGLTQIQTKIGTENSMFTTEGEPYTSETITTHYSCGRIDVHNVPDEPYGDEINVPPMLSTDWALFGNWLETVKTMSVWTLQDLVTAYEQHNKPITWDTYD
Ga0211731_1130821413F039640N/AMNIDELLHQTIRQEGEIDILHYTNLVLLEAARAVKETPITAAFTTFDAAVAETQRADCFRQIYNLITKNIENGT
Ga0211731_113082143F024558AGGAMIVILYTEDFEPIIPIDLPLWLLDRLEKEGAVRVAVNKPRGFTDIQIPVGNLDCETPTVRIRYEKLRWHDGTLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS
Ga0211731_113082145F039639AGGCGGMNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINIIDYWMREAFKAGAQAATHGYEVNALEQFEAFNINRNYPL
Ga0211731_113082148F081346AGGAMMSSMLQQIKMAKPDPNKPITHINPPTVVPDRVMPHKPGYNEIVEVTQTEANPDKPAKPKKPRK
Ga0211731_113082149F035768AGGAMKITIEDRLLAAYHAQQMRLRNREDEDYRARVEVKAFERIVIDRVQRNLRLGLDKGTNIDLEV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.