NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11307935

Scaffold Ga0211731_11307935


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11307935 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6903
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F002843Metagenome / Metatranscriptome526Y
F004206Metagenome / Metatranscriptome448Y
F010533Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_113079352F004206N/AMIPQTTDYLLHKLPTSFQGWTREAVEDYVIFHAEQGTLKVAMQDGHVVAVLVGWRQMGPEPKEWTWQKSDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKKGSMPIYRVADKKYGNIS
Ga0211731_113079356F010533N/AMRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQDEYFAPTYSYQTTYNAGDVVYYKVEEKYYQWVNINPGVGQTPTSGGPGGSINSIYWSEALPSYGNNDGDWNSTTAYTLGQIVLYPVTQEHYQATAVPPVATAPTNTAYWGILNKFLRNISQTTNPDGSTRAVPIGETFSVWPADPRITWRQQEATYTFTDNGILVGNALPYVWLEFRKTPPLLANAAEASAYAFPYRFSEICSLKAAGQMLRVDGKIDLGNQFLELADIELTKEIDKVALQEKYVRQIIVPNR
Ga0211731_113079357F002621N/AMCNMAKLQSLSKMIWLAVLPIFLGCQQTKVVLVPSGDPVMLARPTKASVYSFDSNKKLVGPSKVVLPAGWYVLPKQ
Ga0211731_113079359F002843N/AMIVPVDIVSVQCNQNNSLFVTTGIDYDNSGTIVGSEITSQYTLNPGDSLDGQPTEVVSIANALWTPAVVEAYKAANPTE
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