NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11275626

Scaffold Ga0211731_11275626


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11275626 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26664
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.02%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F012871Metagenome / Metatranscriptome276N
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F023350Metagenome / Metatranscriptome210N
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F039140Metagenome / Metatranscriptome164Y
F041777Metagenome159Y
F045753Metagenome / Metatranscriptome152Y
F046371Metagenome / Metatranscriptome151N
F082704Metagenome113N
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1127562610F039140N/AMNDWLKSLLTSCSKVSSKRVIAIFVVINLIVFSYVATFTHYVCPLAMFDTLALLTGGLFTGTVIERFTKQKDNGRTSENSSEDIS
Ga0211731_1127562612F021113AGGAMNRNIFAAILLFIGTSILWLVLCWNIWGKVHANNATTELQKQDSVINYNAGEYQMLLEETIELKEQLAYYENAQSSAKTTYKRTRNTIIIRDTITLVDVIHLVNSCDSVIASDSLVINNLKEQLNIEGKKINNLQEVVVAYEHKEDVLQEEINNLATDKKKLEKQKKRRNHALVFTSSVAILSTFVLSILL
Ga0211731_1127562613F082704N/AMAESKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYVDESKVKLKEQTST
Ga0211731_1127562615F019140N/AMKQTPLYESLKMTYEREREIVNSMATYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGSMMSKPNQENE
Ga0211731_1127562618F012871GGAMLRNASTTTLTTTQRVDRAERESAFVADYDLPNFVKLCSKVCAMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFEMNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQSKQLKESEMAVNDDSWKQMLAEDIESYKKGKYTVIEIRAVSLMRWLEEAKYITADTFTDEEYNLCKAKARKNIYFEQNLNKPMVERMSDRKRQLLKESIYFEGMRELYKLYLSKQCQ
Ga0211731_1127562620F008546GGAGGMKIQWWKLLVVFVSAIVLEANSIAGFRFLMDKNWIGMVMMVGINPFLCLPMNHYTIEVKTLKERALIALAFSVGFITGVITIRPFFI
Ga0211731_1127562621F091602AGGMDEHFLHVYELTQIISNQKRKTMKSELTFCPNCESKELAERVDEILRDQQLQDWDTAYEFVDEEGEIKVCFDCHEWDDADDDGKGEGWE
Ga0211731_1127562626F045753N/AMYCPKITYCFNDDDIRTLNERIKSIANNYNDDQTGWFEVDEKQHLTFVDEQDNMYTISLRGRFFRSDDPEFDLDFVTLEKDGVSFSFDINIFDDHI
Ga0211731_1127562629F041777N/AMKKTLLFIAMLFAGMLIAGTIDEQTRQLEQTPKHINK
Ga0211731_1127562633F023350N/AVTLENYIEGHYKHFKELAYSIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPRSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRELSKQTGIPVTFLYRTIDNIKQKIRANVIRKTS
Ga0211731_1127562640F046371N/AMSENKLNFLRSQIAMFHPEWTKEQIEMEAIRINEEANTIDDDDEGCLYCGS
Ga0211731_1127562645F036240AGGAMANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGKSIDISVYAKGKAGQYFLFREKGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSTEDLKQQVAKLIMFKVRRDGIKGWNAFEYAFDNIWDEYEAKVVAAYGKDFTATLENELKDI
Ga0211731_1127562646F028175N/AMAITIHDQPYQYTPIGQRLIIVASSTNVANAGFRYVFDFGSFQVNVQPNASDRGILDLAPIFRENLQHDAGAFNDGINLEYTSVSFISCTIKEGWLVDGVFTVSGSGMADIDDVFAFLAEYQVSDGYKPDPNDRYALSGTTKYLLSERTTDTHKWSEAAARGLSNDWVYIPTRLADFGQLYSISNNGLLVDNDATDLFVSTYDNSNTLIDQVNYTLFTDDNSVSRLGAYPQNLITDGVDFTNVKYYTIQAGAPITLPVYTPYSRVYCFYLVPDDCRFDNVRLGWSNTCGGVDYFNFTKKSELSYNYDRKQYQKVIGAYSDDTFSFNTYDRGATDRYVNTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDATLTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0211731_112756269F027518N/AMNTETEIALIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLILKVL
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