Scaffold Ga0211731

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11266176 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020205 Open in IMG/M

Scaffold ID

Ga0211731_11266176 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12031
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12031

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034856	Metagenome / Metatranscriptome	173	Y
F047017	Metagenome	150	Y
F057318	Metagenome / Metatranscriptome	136	Y
F067678	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_112661762	F057318	GAGG	MAENFKVSATGGAGTNGQPARYAAGIDGAQDFYDLQTAAQMSGSNPAFSSVPSPSGQRPFRGDSAQKLVPLDAPTQYPDEDVRTGGAIAPESLYATDAMANSEDANRMRAALPYLSTLAELPQTSNAFRNYVRYLKSAL
Ga0211731_112661765	F047017	GGGGG	MAIQTPAIDGGFEGNPFVSSTKTTMTTWIVNLLKNVPELKNIYASVKNPDGSFNRTTEAIVDMITSSSWYLDKGPTVAANIAGRYKFGEKFYQDKINQYKITISSLATQIGLDLTDPGVADYLESLAETSYLNAWDEDYIENTIIGNKDIVGKIGGGVYETAVQDLAEYGNLMGFTLSEKTIKDYQRRLIGEVTEGGLRTRATPEQIKKEIRDKQALLYPMFADDFAVGRTLWDVTSSQRKVWATLLEKSEDDLDWNDPLWKDGKIFTMTDEKTGKIVARPAWDAEKLVKQTDEWQYTENATRLYEGYGIGILNKFGMAAI
Ga0211731_112661767	F067678	GGAG	MPTNYQFDDEDDIDTSTDVVSQLRKVNRALEKRAKELEQELSGLKTQTRQRTVKDVLQAKGLNPKISAFIPQDVDTSEEAIAAWVDEYGDVFGVQPIQTNDTPTQKGPDVSAQNRMNNVIATGSMPDIDEDMFAKVAGVKTKEDLDALLGFN
Ga0211731_112661769	F034856	AGGA	MTQYKFTTPTVEETPMGEGVLFERYKITRGVTVMRNNGIYSSYRYPSQTETLAAQELYMGGTVTVIDQATADALTAQGYGAYIEAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211731_11266176

Overview

Ecosystem & Geography

Associated Families

Sequences