Scaffold Ga0211731_11084382

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211731_11084382

Scaffold Ga0211731_11084382

Overview

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11084382 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4751
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1108438216	F029046	GGAG	MELNAVDTLQDLKLWVEENMPSASVREDMHGTLIIHTNLISTMGGYLHEREGE
Ga0211731_110843825	F055552	AGGAG	VNKEYWQAKAEVCRQVGIEQLMAGDIPNGTRNLKRMVRAMEELNLIKAVEEDKSAEDMWASLITNGLLLAGEGESK

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