Scaffold Ga0211731_11080773

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_11080773
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2361
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F075748	Metagenome	118	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1108077310	F001477	GGA	MSNVISFHPKKSPLILLYEVVDAEGVAEWGGENPEHCMQWLYLAPTGSRVLVSGWDSDEEDAHLVGQPLDITDIIKAASL
Ga0211731_1108077311	F083901	GGAGG	MNQTTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERSFDEKEGKDWTGIDGFANLSVGTHTRANRTPPFGDPADAGEDEGNYGGEA
Ga0211731_110807735	F075748	GGAGG	MNKQEILAVIDSTEAFNTFIEGMDTLNGQALGLVIDVAGVDGEEWTDEECLETIKEIVDMTNAYRNTHDWSN
Ga0211731_110807739	F000821	AGGAGG	VNAEYLQAKFDLSINQAEKDLKENEIAKAIKNLERANSALYRLGLVREGEADE