Scaffold Ga0211731

Basic Information
Taxon OID	3300020205 Open in IMG/M
Scaffold ID	Ga0211731_11077640 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020205 Open in IMG/M

Scaffold ID

Ga0211731_11077640 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6172
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6172

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F055672	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1107764010	F007260	N/A	VNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARILVKLADWRLADSTLVTVDAAVWSCDVGANVDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0211731_1107764011	F055672	N/A	DTLRGSWIKANDNFTELYAALPLVSPTAWAATLTDSGGGRTFNVTVNVARHTSIGFVSTFTADLTVNSVSGSATGNLRLSLPDPVLYEAAFSVWLDNGTNQAKTAVIARAINGTSYCEISHFENGDAVSLAGHLQATSRLIVSGTYFTS
Ga0211731_110776408	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADPDLEDSMPAFPRIVVRASTAVPVHPTDRTCEVDVTATLQLSADDTSESHLLATVQVFENLLQYLYVDGNISELNADDTNPSGGYNAQFAVPVDFGINDISERARTFSRSMTIFAAANEQ
Ga0211731_110776409	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNFKAGNEGLYGSTMRTAAAKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVSMHRGSSAYAFNAKAGFNPSSHVRLNIGLSDNQVGTVEAIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211731_11077640

Overview

Ecosystem & Geography

Associated Families

Sequences