NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_11053719

Scaffold Ga0211731_11053719


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_11053719 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7013
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F020906Metagenome221Y
F023592Metagenome / Metatranscriptome209Y
F029049Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1105371911F020906AGGAMPTSAQVTVGATATVLVAAKDFDQTAYLHNSGGGIVYLGASNVTTANGYKMDNGDKLTVGVGDHEALYAVTASGTNVVAVLTQIN
Ga0211731_110537195F029049N/AMVMLTMPQVAKVILDRTQEITAHKIGLERAINFNADPKDSNQYGQRFANYHEFIWQKAEACGAETAVANYFGDYGFTPKVDVVHEEADVGENIEVKWTKHINGHLIIQEGSKARPNDVAILVTGFSPVYILLGWMPISMATQPRYKHPHQNNYWIPRASLFEMQYLKRSNYGL
Ga0211731_110537197F007029AGGAGMGFLDNYEDVNARIKRFRSEFPSGRLIAYIEDIDIIKGTVLVKAEAYREYEDAVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEFNSRPTAQDMQKVETLPADSDPWSTKASIEDMATMASSIKDIASSLGGELVAAAPRCPHGSMIWAEGTAKATGKPWAAYKCTEKNRANQCNPLWHVLASDGKWKPQV
Ga0211731_110537198F023592AGGMNSLDILVGLGACGFCFILMVMGYSIGYREGHGEGYIRGRAIAKALKEQELI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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