NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10922238

Scaffold Ga0211731_10922238


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10922238 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3242
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F066778Metagenome / Metatranscriptome126Y
F070109Metagenome / Metatranscriptome123Y
F077297Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1092223810F047677GAGMKWLKSIFSNEGDASSKRVASILALLVCINLSYIGTFTDYKTPEYMFDGLLILAGGGLGLTVIESIFDKKKSNNDTPNQDTN
Ga0211731_109222382F066778N/AMNYSREPNWAKLKPTIDWDEQEEKLADKLEGYINQNKIKQTVMNQGIVKSQKFVRTWNGPQGDIYYFDLIVESNGVNEVGQVGVKDMNSPKIQVGATLHYTTEERTGPTGKKTTNFKMQNPNPFNAGGSSAAPSNAGNSTSNYRKESPDVQNSISKSVALNNAVLFCKETKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0211731_109222388F070109GAGVSLTTSEVRALLKLKAERDYLFNAVNICTKSDSVKGKVITDQQKSIDAWAITNEKTSQQLVKSQEQLYKQTARKESWRSAALIGIPISFVGGIIFTLLF
Ga0211731_109222389F077297N/AMTHQTKTQIKIAVVFGAAVFICILMQLMYIRIKEDEKALQGYERRADRATHVIDSLEATNAQRMLQIEELNQQLERNKERYEANISAIDSLDRNGLKRAMHNLLSSLTGERHPGESND
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