NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10720504

Scaffold Ga0211731_10720504


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10720504 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15794
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (96.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F003539Metagenome / Metatranscriptome480Y
F003658Metagenome474Y
F004721Metagenome / Metatranscriptome426Y
F085350Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1072050413F000368AGGAGGMEQFKQVTLTWFRAAAASAVALFLAGESDLKTLSMAALAGFAGPLLKWLDSSAVDFGRGS
Ga0211731_1072050416F003658AGGMNDLRGEPTFACICGCKMFKVTVMWDEETRAVGWYDLAQECIECGTLTTAPTDIDGDDCA
Ga0211731_1072050417F003539GAGGMNYIEEYNELVQQLSAEYSKRYTMLERDDIGQELWVWFVSHPNKYKEWSALEQKDRDKLIAKSLRNAALKFCERDKAKKIGYDTSDLYYYDASVVEAFLPSIMGDTYEIPTSIQDLNAKFGTGVASDGNNWLSLRSDIAAAFYKLTEAKQNILRLRFSIDSPDWALLSKDMDTTVDGARMKVTRALNSLIKNLGGWKPYYDRDTKAEE
Ga0211731_1072050420F085350GAGMSESENALPLDDSFWEHIEHIDFAIAIPVSNTRMLDIISALRDVYETICDNKIEEAKMCVTALAAILVASKYDKAEEVWEEFSVKEAMRNFDTSIKEILDEKS
Ga0211731_107205045F004721GGCGGMALGKEGSSLTAELNRLAGTTGKADQGAANTYASTSGLGLVAALNKKASGARQPSAYKGLNAICNELASTTGKSAVAALRSINV
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