Scaffold Ga0211731_10290035

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10290035
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19209
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F073284	Metagenome	120	Y
F091603	Metagenome	107	Y
F097185	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1029003517	F073284	GGAG	VKNIATMTHQEKIDAVNTFQIYIESAVESEQNEPAEFKLETQHRIDLILVNLKEIFGLQDNS
Ga0211731_1029003519	F091603	AGAAGG	MTISRFANGSDSKRRVLGLAGEWARREKLPGEAEPATISIWRQPVYQPPKMETPRPGADDHLNIRSRGI
Ga0211731_1029003520	F097185	AGGAG	MTEKQRAYLHLIILPFIISAAFEFCPPWVYWPICLLGCMAWVGSCVILSEKDTV
Ga0211731_102900354	F000961	GGAG	MNIPEIDPVKYGVLWQKVQDYERRFDEMSAKIDKMETSIERLVEMANQSKGGFWMGMVAVSAFGSVIGYVSHWLGKS