NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10285172

Scaffold Ga0211731_10285172


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10285172 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1558
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F005503Metagenome / Metatranscriptome398Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_102851721F000903GGAGGMINRIEEVQCMIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKALGYDYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRDDRDIAVLVTGHSPKLHINGWIPVAIAKKPRYKNTSQNNWTVPQTNLQPIETLQWS
Ga0211731_102851722F000403GGTGGMSEYMEIINPQTRIAKVFFEGKVVAEYRVEQCDKCSKLMKFDQFGYQKGYDRTENVIWFCGGCR
Ga0211731_102851724F001897AGGCGGMAFMDNYEGNKERTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGFLAAYSDKMKRWMIEDTCTSALMRVMALVLGGTEKATAEVMALVKTETRAADYDYWTTKHGDVPSYKTREEAEEAKPIAWEIPAESAPSCSHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPTWYVLTSDGTFKPQV
Ga0211731_102851725F005503GGAGMTTSEIGLFVLMAIACILWAICSYAVGYKEGHKDGYQRGKAVARHISAKAAR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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