Scaffold Ga0211731_10242658

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10242658
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F020906	Metagenome	221	Y
F023592	Metagenome / Metatranscriptome	209	Y
F063488	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_102426581	F063488	GGAG	MTNFLEGYEDVNARIIRARSEFPTMRLVAYIEDMDITKGYILVKAEAYRSYEDEKPSAVD
Ga0211731_102426582	F023592	AGG	MNSLDILISLAACGLGFLFMVVGYSIGFKHGHGEGFVRGRNIAKALRDAELIK
Ga0211731_102426583	F003067	AGG	VSQAQAYIAVALGIATLSGLMAGLVRHLVKYYLSELRQDGNGGHNLVGRVERIEVRVDKIYEMLLEDRLAK
Ga0211731_102426585	F020906	N/A	VTTTATLLVAANIMDQTVWLHNQGGGAVYLGDANVTTANGYKLDNGDKMQLPVGDHEGLYGITASSSHIVAVLKQVN