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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020205 Open in IMG/M |
| Scaffold ID | Ga0211731_10233770 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3034 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038245 | Metagenome / Metatranscriptome | 166 | Y |
| F045760 | Metagenome / Metatranscriptome | 152 | N |
| F070116 | Metagenome / Metatranscriptome | 123 | N |
| F078719 | Metagenome / Metatranscriptome | 116 | Y |
| F099303 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211731_102337702 | F070116 | N/A | MSKFRTWDSEILAEAVKVSLQIRAKIEEMCITTRTSPDGLPNSLIPTDNLYTLVCAYEAAYNALIENDLVKSGNLKTDKNIH |
| Ga0211731_102337703 | F099303 | AGG | MNFIEFTYTKADGTESKRALLPLVGPTTFVEGIDVSQMPEDEFVTFCRDFSELKSTQHEQTMAMLAKFDLKHNYRRFIPEQMSDITTDYV |
| Ga0211731_102337704 | F078719 | AGG | MEVIELYFLFALTTGITSCYLFLVPAIALARDIGVHNSFTENTWLSYLIYITITTITAPFSVLPIFIPSFAERFKTGLEKSVMENQI |
| Ga0211731_102337705 | F045760 | GGAG | MASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHGNIRLAKLFKEFTGRASADLFSSNPKVQSVALAYRRDWDKVKVIEGKVNFSLGARAHDSKGNLIWK |
| Ga0211731_102337706 | F038245 | AGGA | MKIYFGNANEDLFSDGLFVINDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALKEVQRVNEAVKEANRLTERAESTIKGYVYSSWNDEFEVDFDTE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |