Scaffold Ga0211731_10168337

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10168337
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9102
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F007921	Metagenome / Metatranscriptome	342	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_101683371	F007921	GAG	MIDWLANKLFWWTPLRDAIFDEVKIYQSIDRSMWEHEKNRPTNLTWAEGDRWYGWTYNPELKRYYFNDIGSESLMSLWEEQWSKEN
Ga0211731_1016833719	F016396	GAG	MRKSERLRLLEMQVVRLEMLVELYTLSIENLLESQNLKPNELDAGKWYQKRLNGLK
Ga0211731_1016833725	F000473	AGAAG	MENNHFKYGVNEWTGEPNKPVFYTQEMAKKIKEIPSPGMLLMDIVKYPDFLAIRLYEDNFIQFDGSAKERVIDYVGKVKKLIESFGVRCELEGQPSAGIL
Ga0211731_101683378	F026561	AGGA	MSMDGTGMTPPPASGAAGAVTSQDATRRNPKQNLRSGMKVDRNRHGIRRETSLTPKPPKKTGRKKV