NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10160346

Scaffold Ga0211731_10160346


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10160346 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7122
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y
F016499Metagenome / Metatranscriptome246Y
F051683Metagenome143Y
F053035Metagenome / Metatranscriptome141Y
F058718Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1016034611F053035AGGAGMVSPFELRFSIFNTAKDLLVKQHEASLAAWEVLNKTSKEAADLAPAFPTTEEIIDKAIEINTFISGQYTKELASVAKKLAGVSVIF
Ga0211731_1016034614F016499N/AVAAKKAPANKKVFTEEMAKTILELGQQGSSQKSMYAAINISKATAAKWKQEDPFFAETMDMATTYGQSYWEMMLLANIDNKAFNSRVAEIALRGQYPDDYKDNREVKSTVKQEITVDFNKEIGDLIAALKV
Ga0211731_1016034617F058718AGGAGMRVECYDQEIEVPDIMIDKFIKDFETLPGSGYREGVCQLRASINEIVDMVAEDPEILFEFEYLTDFIKALAMKQAMGELGILYDA
Ga0211731_101603463F015062N/AMTSKRTKTKHKINAIAPRLSDEDIDPIEQDDSDTISNHIVEGWQPWDQEDINDIRRLIENKMMPKQRFIIEGFLDGMTHIDLGVTEKHWRYHFLKGIEFIKKELQL
Ga0211731_101603464F016247AGGAMTTFIVEHRIKGNYVMETIAGVEDIDTSMYKDLLGIWVCDSVEEAHAMEEQLKEMRHARSGQPT
Ga0211731_101603467F051683AGGAMILELEDDFTDEIVVANLAQSYVSISKNLKDPKSCWHEDDVEAWKELLPALKLVGGWYSTDFDAEIKKAKKK
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