Scaffold Ga0211731_10141092

Overview

Basic Information

• Taxon OID: 3300020205
• Scaffold ID: Ga0211731_10141092
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7884
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F025214	Metagenome	202	Y
F086584	Metagenome	110	N
F091631	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211731_1014109216	F025214	GAGG	MTTNLYWTEDGKAKNLALLTSTEHLEIQETLRLTEARDWIYRYRKKVKQLGQQEARTWWEAVKVDINKRRGQDGLNILITEMQRQRNDVNRI
Ga0211731_1014109221	F091631	AGGA	MAQIMKNQLKGYGTHATMSGNPAASDKTGEHGSAKKGIPAAKTNMTGPDKAFDGGRSSGVCYT
Ga0211731_101410928	F086584	GGAGG	MLHDGEEGEFCEFIDSIGEVRVCWTWCEGNDWDTDGYFDVFVFEGKNDITYDIPKDELIWLEKQVPIYAGYEPPSRQRVARAINGYLNKTF
Ga0211731_101410929	F005737	AGGA	MFEIEKYIKPTNWANVALWVVSIAALVVVALDVFYWRA