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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020205 Open in IMG/M |
| Scaffold ID | Ga0211731_10110113 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19360 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001599 | Metagenome / Metatranscriptome | 665 | Y |
| F001706 | Metagenome / Metatranscriptome | 648 | Y |
| F019798 | Metagenome / Metatranscriptome | 227 | N |
| F025224 | Metagenome / Metatranscriptome | 202 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211731_1011011313 | F001706 | AGG | MSLHRVQTHPEYVEGCFGCKVMTLELGTGDATRDVSDKKWTSELQAYRDAKAQGIQPGGTTRAHVEAAHAASETLGKPYNSETMPKAHQITKKTAEVMKEIGQA |
| Ga0211731_1011011318 | F001599 | N/A | MVDGKFMQGVTDVMLKSGLEFTSTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVITPEKFRLLWDNRDAKERPILTGVYFTTDTPEEPLMIPMPTIFNFSEAEDGVVGIKRVHPMPENELIKVEAAGMGFVLMHRNVIDKIIEAVGNEIAIFNEIGTGKTFMGEDIYFFALVGKADVPVYCHTGAVVPHMKRFSFDEHYYKAFFGGTKPKEKSNLILPKR |
| Ga0211731_101101134 | F019798 | AGG | MTTLVAIQGDGWSVLGCDSRLSDEHGRFQIAKTPKIVDNNGILIAGCGSSRASNILHYGYVQPKPTIKEDLNTYMTVKFIPQMRKNFIDAGIDMKEDGDVALIDGGFIISVKGQVFSVSEDYSWDTDIRNVYVMGSGGDVALGALAALGVEKVKTINQAENIVRKAIAIAIQYDNMCSEPIHIFKQYA |
| Ga0211731_101101136 | F025224 | GGA | MADAAWMPGSFFDNIDKFANSLGYQNAGIVMELSMISWPSPEERDSFIIGITNQDPQGGTEKNYIKQKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |