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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020205 Open in IMG/M |
| Scaffold ID | Ga0211731_10089871 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39508 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (87.93%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F008808 | Metagenome | 327 | Y |
| F028458 | Metagenome | 191 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211731_1008987115 | F001531 | AGAAGG | MNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYESDVVEALLPAVLRCEWGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPFYDTDFTETTETETSEEMSYQELGTPQESEQ |
| Ga0211731_1008987116 | F001515 | AGGAG | MTNKSSFDIDFGYGRKGEQLVEELLTGGRTVEVKRDRKWWITNNLYIEVECWFKKSESWEPSGLMVTEASHWAFVLEQAVFIIPTHILKKGVLEFGREISCEIPPNKSKGYLITVEDLLTMTRKFKNEKVSDELATN |
| Ga0211731_1008987119 | F008808 | AGAAG | MKNKINPCPDCGQQFDNVFEATDHLLEEENEFDPALVLPNGYRLMIGSLLRCMYRYAHDPEQIKSITQDTYMTLFTAETQPDVILDVIEDMIVGSSMVGIDDELKQLLADGE |
| Ga0211731_1008987132 | F028458 | AGG | MAKVNKGTLAIGWCDNGNTDGKFTEGVVSVALQCANNGIELTHSMRVQGNQIGRQRQVLFDYWADQVKTDWLLWIDSDIVVNMEVVAKLWDAADKISKPVVSGTYFISKENEGTLAKPYPALFFDVDEFSIQHVHPLPPNELIKVDSAGFGFVLMHKSIIPKMREKFPDQSMFAEQENVGDKYVGEDIVFFRKMQEAGVPLYAHTGALVKHIKRFSLDVGYYDMYWTLDMIKQKAQEKQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |