NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10029952

Scaffold Ga0211731_10029952


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10029952 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5565
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001097Metagenome / Metatranscriptome780Y
F001713Metagenome648Y
F002487Metagenome / Metatranscriptome554Y
F007518Metagenome349Y
F014143Metagenome / Metatranscriptome265Y
F087188Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1002995210F001097GAGMNFEWPTNDSSRIGTLQKLRSPRVDTQVQPKEIDDWLCQSVALVAGCVRGLGTNQRKVRYFAFEGQNDKDTK
Ga0211731_1002995213F087188AGGAMSNRFNADCYFQQEQYNPRIRATVPPAWIVEFDCALPDTNVPPVFYGHSRREAIQNAIDCLKSMGLTGRLILN
Ga0211731_1002995214F001713AGGMKYEFDTTTGEGSVIVTVVMEYEQDEDGTYNENISDVIYEKVSLMGIFTDVQFKELEMEGTMKLTSHLLAEADEAKIAAYEG
Ga0211731_1002995216F007518GGAMTDWTKEEDEAFNIVEQQSNLGKQILKSQGQPYHFDTYVSPSQRNHVLEEVALEFDKMPFGDTAHSFAAFVRGMKNVL
Ga0211731_100299522F002487N/AMTRQDAIKDLSHDDYCCYCTEPKGDKYVCCSENHFVPFGDLYDEDKEAMIEEYLTKGK
Ga0211731_100299523F014143GGAGMNTRFLTHVRKIFRTYDAPPEVIRSYQKQWVRSVRQLGDKWLVAKPIERIQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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