Scaffold Ga0194116_10020168

Overview

Basic Information

• Taxon OID: 3300020204
• Scaffold ID: Ga0194116_10020168
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5661
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.4662
  • Long. (^o): 29.9408
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012110	Metagenome / Metatranscriptome	283	Y
F023807	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194116_1002016812	F023807	GAG	MDMVRLIDIKQKYRMEFTEQEKEINAHILEFQEQTRLNELRDKFEKCLNVEE
Ga0194116_1002016819	F012110	N/A	MTKALLLLAWVPLLSVSTPRLIQNPYPVSISCDAAWELMDIVKNDDVVHQRREDQLLLELRKDFIQRC