NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163148_10168297

Scaffold Ga0163148_10168297


Overview

Basic Information
Taxon OID3300020203 Open in IMG/M
Scaffold IDGa0163148_10168297 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1275
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046725Metagenome151Y
F055323Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0163148_101682971F055323N/AHAHRVSNLANEDVDLVGRVDQTWSYFYGGVTLITFKFAYKSICSFGETSE
Ga0163148_101682972F046725N/AMSGTTGTASTAVTLSPAEEMKADKARLMTALVNVCGMPYEHYKTHPIALALKRNGVARFNMDFIHMTAADIDGLQCKKGGAPVPLELNFKMILRAFLAFCHHMSHKQQEGVNILDPTLSVHFKTYRNSECDPTKEITPWGLAVSNNKGLSDWNKLIKPSARDFKSFREANCWVDYKDVFMITLEAQNLTHLVDSSYVVTDVDLHKAQQSFLYKALRDNMIHHEAKSIVKTLSKTKDTALIWKLTCENYDKSMSTSLNGDAILQ

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