Scaffold Ga0163148_10100831

Overview

Basic Information

• Taxon OID: 3300020203
• Scaffold ID: Ga0163148_10100831
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021217	Metagenome / Metatranscriptome	219	Y
F056298	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163148_101008311	F056298	GAG	MFSDGVPEMRLGKDSALDSCLVCLAANMKSRNRGEGETRTATESGQGLSLDFSFAGQHSKNATNPEQMRINDYMGIHGETCYLLLCDHAMERLDGVCRQSKVPPTAWLKKWLSKNVKDDVKDRCVFMDQGGELYRSKAIRDLFEKEFGYEIRVTGTGAHLQNGLVERAN
Ga0163148_101008312	F021217	GGA	MNDKSVLWGFKWCTKKNPCRVRLICANRKNPIVPEGYGTARIPANNAEGHVPIKCYYTPDIPNFILSPNSFKPLLGKHYNGCTLECDDDKKTFQFTVNHNKRKSGSLLLLGSTRGGLCYTRSAVPPMPTTEGTAKMSLDAADKAAISMVEDHPKNSHQHELKLHALSAKAER