NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163148_10010924

Scaffold Ga0163148_10010924


Overview

Basic Information
Taxon OID3300020203 Open in IMG/M
Scaffold IDGa0163148_10010924 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7945
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024483Metagenome / Metatranscriptome205Y
F056298Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0163148_100109245F024483N/ALAWQIRAKYIQDTKKGIFLGYRTNTLKNVVWYDPLTDRVKYGYHVQFDEGFNNLPLAQLPPNVVLMDRREERVPAEKLTITIPPFTTSEHPFFHEDDVTVKVVCESDMYGFELSEDDCMKHVYISGLKKDGKGTKGRRSCKTMRSSERATRRKHRESCITAIDDQEIVTLDQAKEKFAEL
Ga0163148_100109246F056298N/AMKSRNRGDGERRTATEPGQGLSLDFSFAGQHSKNATNPEQMRINDYMGIHGETCCLLLYDHATERLDGVCRQSKAPPIAWLKKWLTKNVKDDVKDRYVFMDQGGELHRSKAIRDLFEKEFGYEIRVTGTGAHHQYGLVERANQTMDKAIRAMLIGAGLPVKFWPYAFRHFLRIKNSALPRRDSTESAQQKLHGEKDNLGLL

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