 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020199 Open in IMG/M |
| Scaffold ID | Ga0179592_10020115 Open in IMG/M |
| Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2964 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002013 | Metagenome / Metatranscriptome | 604 | Y |
| F004921 | Metagenome | 418 | Y |
| F043881 | Metagenome / Metatranscriptome | 155 | N |
| F084587 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0179592_100201152 | F084587 | GGAGG | MEQERDVLAVKDARKFEVHCNAGDAGEFCVGTESLSVKVGQRIHRDGVEEIWHSLLIHCDAAEDGSLRVKVIVCHFDWEESRQIALIQSKPNHQEGTRTLIFDLEHKDV |
| Ga0179592_100201153 | F043881 | GAGG | MHRNISRAYYALMAEHHRVRAAHMKILARGDAMLERKLLRAKEDDEGHIEEVVTYEERLSAAQRRRVYKLSSYGRKIEKLVDALLKLQETSDALERGRHK |
| Ga0179592_100201155 | F004921 | GAGG | MPKKKKAKAVMVDGIPITPISAAEHSRLDKRIKKKHEKLRRRYPEVHGKKVDWISHWHEEGLCFFDVRFMDGQNFSVTCHLVIVTDSIDFSDMKSGDDVIIREYYRRRDD |
| Ga0179592_100201156 | F002013 | AGGA | MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRAMINLQFMLEMRKLEENDESYFNEEFNVWLSDEPLTNEEICRLMRGVERERKLEGKPPLVQFLPQGKRTKKAPKKAEGVHSHRKVNGSPTPASGVKSTVPEDAHA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |