Scaffold Ga0179592_10005638

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10005638
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5330
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014602	Metagenome	261	Y
F046930	Metagenome	150	Y
F051726	Metagenome	143	Y
F090128	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_100056383	F090128	AGGAGG	MAESKIEPLCPVRFQTSDGQLYDVDYRDIEKVFDRDPEGRTVPGDDPSDLLLTAEDCVWLWMWGIGH
Ga0179592_100056387	F046930	N/A	MEGPVPRLLSISIISALAVFLAGAWLLHDGVSARDPLHLQIEIIAGATLLSVGVVSSVLLLRDWIKWKRELAKYRES
Ga0179592_100056388	F051726	GGAG	MSMSQRQIYRCQNRACGCEIIVTKTSVETRANPRCFCGSNMKKPYSPPVLRMLNPDDELVSRLEQIEI
Ga0179592_100056389	F014602	GGAGG	MIDSWMKQSPSGKTVTFKIEGDRKSGFVYSAKMDGRDIKEIKGFREELTREGVEVMFAKYVAGK