Scaffold Ga0179592_10001568

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10001568
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9268
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005426	Metagenome / Metatranscriptome	401	Y
F022302	Metagenome / Metatranscriptome	215	Y
F037642	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_100015681	F005426	GGAG	VTEERKFAILFAATILAARKLIDLDPNKPNMAKGFFVDHAIDNAAFILERIDARWPTIVNSFSAKEP
Ga0179592_100015684	F037642	GAG	MGKFQKEKMLQAIACLTCTVVLWVHLDDFGASEFSGGRLTGPLFKMADLGSVLFLLALLLTFFLRRTAATISLAATLLCFPFYLYVLMPGPYRWIFKGEYSVPLYRPFHWDNWAVVGVFSLLFVATLSLRSYSKLQVDV
Ga0179592_100015687	F022302	GAG	MTSSNLLLSGRPKTYNGDAMRILVGCLLVATASFALTQSSHEFHSRYGEPDMERFTARPGISLAVEYGSDHLACQALIEPPQPLIHQEEQARLMSSEGASQVLEEVAPVATRGKEINSRIDFTGCVAVRMTDYENVFIMRTTHTCGDSSSHDQDVRIAITFKREICPKPKTLFTVTRP