Scaffold Ga0179592_10001256

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10001256
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10292
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F002013	Metagenome / Metatranscriptome	604	Y
F004921	Metagenome	418	Y
F077875	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_100012565	F077875	GGTGG	MRFLLGFLFGANYIGNRVFRVAFLLLVLFMVFCLYQMSKPLGHNRRAAPPSAQVR
Ga0179592_100012566	F000528	GGAG	MGEWKAQISLRVRQDLRREMEEFADKERRKLGNVGEVLLEWAWAQLQAAGSLERLLKFKIRSKDPT
Ga0179592_100012568	F004921	GGGGG	MPRKKPKAVMVDGVPIKPISAAEHKRLDSRIRKKHEKLRKRYREVHGKKVDWISHLIEEGILFFTVRFTDGKCFSVTYSPCVNLDTVDFSDMSTGDDVILKHYYQRPNV
Ga0179592_100012569	F002013	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNHEICKLMRGVERERKLEGKPPLVQFLPRSKRPKKTPNKTERVHSSRKLNGPTPSAPGVESTVPGDAHA