Scaffold Ga0179592

Basic Information
Taxon OID	3300020199 Open in IMG/M
Scaffold ID	Ga0179592_10000986 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020199 Open in IMG/M

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11540
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11540

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000437	Metagenome / Metatranscriptome	1146	Y
F009766	Metagenome / Metatranscriptome	313	Y
F014313	Metagenome / Metatranscriptome	264	Y
F060303	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_1000098610	F014313	AGAAGG	MPDWQKLVGQRLSGLALDAAEKDEVHAELAAHLEDFYESLRTKGLSEQASIQQTLAQVANWPDLRRKILIAKKGRDFMKKRLHQLWIPRFLTFILSTVFLMTLQKLGFQPRIVGDGPNAILFCAPWLESLLFVGALGAYLSSRAGGSRGAALFASVFPVLALTTAFLLMFPIDLIVERAIGNHVDFSIVATALLREGIGWILVPGAALLVGGLLVQFLLSRRLTSRSVAGS
Ga0179592_100009862	F000437	AGGA	MIARRFNVAFVLLICGTSTWAQAPSQKPLWKSVGFAIVKFNNEAPKSWNIYHTEKKGLLLVRLWKRYLLVDTKEQEAYEIDPQTVKPHGEDVEWSTTDKPDQPIETPEWKTRDVGSMQLVRFRLGKDGHILELQIPILINGKPAY
Ga0179592_100009863	F009766	GAG	MFRRRLFKRTAVFLAGSLLFPYVSQIYPPLDLDLMLVFFGALFFVALAIAVILERRARYRRELEVLKRIYAGFIPLPWILAATLLLNGKLDSQKNVAFHPTIVDSRYNMPGIVRGTRRLFVHSWREGQKIERLAVDFDDYDRFRTGDSVVVGVEPGALGIPWYYGVYRR
Ga0179592_100009864	F060303	GAG	MFIEAVDPLWVGAGFTARLTLKRPVSLNCFVKRIEPGKGMGVSVAVSEPESQKLYENLLSSLSTTSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0179592_10000986

Overview

Ecosystem & Geography

Associated Families

Sequences