Scaffold Ga0179592_10000802

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10000802
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12729
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000564	Metagenome / Metatranscriptome	1021	Y
F003496	Metagenome / Metatranscriptome	483	Y
F009615	Metagenome / Metatranscriptome	315	Y
F063013	Metagenome	130	N
F099010	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_1000080211	F099010	AGTAG	MGRTVLIAILMLAASHSTIGQNAQPSSTAFHWLNSSKDATLFERIKTAFADELKPDDPEKVKPVVAQEYKWISRVGVFETSALVLIGERETRTSTYGNYFVAFNYDLKSGEKTSLTPPNKGFMQWKFKKLVRFDSSRTPDIVFTHPSCTECEADYFLSSFCVDSADAKWKVRTWSEKSTEILIGSDYSVGNEEDSKNDCLFKFADFNGDGFDDLAVRCLSITEQRKILEDATTVYTIQHGQPQVLTVKDRQQLGTIRDQLCVDAKKSKLCPSKKAISREMP
Ga0179592_1000080212	F000564	GGAG	MTIHLTPEQERRLRAVLDRGAYKSVEEVVEAALTAVEQRTVPGFSGTHEELDTLLAEGLASKQLAEDEFWSSVGKQTDAVLAEHKTGPRS
Ga0179592_1000080218	F063013	GGAG	VKRAATVFASVCTALLAILVAPRIATRVLFSTFSPHQRYKVEVSQYRPFPFDERAVFLNVYRDGRTRTVHKLLYTGDFLDGDFRDLYPNPRFRSEDIYELGDVMNDGSTSRPGNLRIVNATQKEISYLLIETGWYKLVVLDLKAGATADLNFQYAGGLSCQARFADSGQRFASAVSIVDSADSKESRQISITVRGGNVAIESPQPGLRASHCCASDRPDPQHEWLY
Ga0179592_100008022	F003496	AGGAGG	MPATRPSKELRAFCHEHHVEMRLNRNPLNSKGDPTRTPAYACTEPDCLVHYNAYRGYFILSQNGITNEPDTVPSVRCPYDGTPMYLAEIDLRKRAFRLWICPQCDRRRTNEEGLIGLASQGI
Ga0179592_100008023	F009615	GAGG	MTQEAALEFPRGVAREDCLGECSPSPSVARLLVRAPRITERSEARDHLNAPLWLTSLQRPGVFEVVPTKNVSRFGIQMVTQEFWEPTDLVLVSSPPGFCVQGSVVYCKKLPSEDYILGIRLDAPVEEWMEQLGLGESCQTLA