Scaffold Ga0179592_10000271

Overview

Basic Information

• Taxon OID: 3300020199
• Scaffold ID: Ga0179592_10000271
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21005
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012701	Metagenome / Metatranscriptome	278	Y
F013993	Metagenome / Metatranscriptome	266	Y
F019165	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_1000027110	F012701	GAG	MRLVLCATGCVGIAYVTDYLYLRFRMLHPKPSDPYESITALRILAIPEKNGKTEYQVDAQNPERIVTCAHSLFPHYGYLPCWYVKPRINQPIPM
Ga0179592_1000027114	F019165	GGA	MNPFPKGTLVLVRITAGDALFAAKSKIIYSQPNMGAGVVFLQIEPQSQTSLERWLDGAEKDNQRQVG
Ga0179592_100002718	F013993	AGGA	MKRQKAFSLVLLLIEVVFTLFIAGIVVPSLLRSDLPTKEVFAVDSPRTINIAGIAFSYTTHNVEFAILGALIGAMAAFAIPFPTSALKNTTSTQPITLQAAPLPH