NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194120_10075331

Scaffold Ga0194120_10075331


Overview

Basic Information
Taxon OID3300020198 Open in IMG/M
Scaffold IDGa0194120_10075331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2397
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F009396Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0194120_100753311F009396N/AKTEDVFVTTPYVDFNHIHDLGFSSDSSDPGYRSYAELIRAERYARKQIEEYTGQHFYLYDDAYVIYGCESDTLPLPAKINSLQKLYVKDILLIDNLASPAVNNWGLTVNLTETKFGLRVDRSSTLDNAVYIANGMVPPTIHDYAGIFKSGVPYKVQGRFGWSSVPENVEQAAAELMKDYFSKDTVWRNKYVKNISTFDWDFEYTGNAYTGTGNSFADNLLADYILTAKAEII
Ga0194120_100753313F001900GGAGLDNSGLLVQASSGLERMMYANQKGPLKDSTVAQVSAYVYYEAAVLSKLTSNAQFKGAFTKVIFDQINTDFGNYVDALARARTKSLHHVYEWKRTGVPTARLFKLNKVSQEGLSFKINYEFLPSRSMVPSSTRKRRHVFVNKAAVIEAGKPLVIRPKNAERLVFEYDGEVVFMPKGKPVTVRRPGGSGATNQFTLAHSRFFSGNLVNQSIKRSGFQRLFNSGITKALRVPSNIKKVQYSFSPNMIRSQADSALMLAFGGAM
Ga0194120_100753314F000258GGAGGVTANYKLDAMLELRKYLWKELYTRKIFDKDDYWSDNLNENIVPIIPVQQVAEMNQFLSGKKHIVYDKIGLSYEENWLICCEQILFNIYSTSVADIIEIRNYMTDEFRRMDDSARDINKWADLSNKFKFHSIFIADISPTAPSEELQGFFSAEVILEVKYSRITDSVG
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