Scaffold Ga0194120_10021042

Overview

Basic Information

• Taxon OID: 3300020198
• Scaffold ID: Ga0194120_10021042
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6624
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072364	Metagenome / Metatranscriptome	121	N
F083739	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194120_100210427	F072364	AGG	MPDLIEDLGFADGISGNSVKMFLDGVPVLALQNFNWKIKKAKKALYGAGFKSAHGVTRSAHKTYEIDFEIKEILTNSAINAAETAKNAAFLKTFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATGATGVF
Ga0194120_100210428	F083739	AGGA	MNQPTDKELAALKEKFKGYPLFQLSDPTTGETFIVRGSNWDEFSQVGNVKPGRENRVPLNMVKAYVVWPEIDAVDLEYNKSGNWQPGRIVALAEQIQELLGYNKAFSVKKL