Scaffold Ga0194128_10027461

Overview

Basic Information

• Taxon OID: 3300020197
• Scaffold ID: Ga0194128_10027461
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4997
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194128_100274613	F000847	N/A	MSWIKIKQALLTLANSHPQVNSFGTGDPLAIGTDNTINLRTPNLERIVYPLVFADVQSATTDAGTLSLVVGVYFSDRMESIAPMGNVVSGSPLLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEEWTLNTSVSLTRFVESRDDRTAGWVATLTFVIPYGHSICEIPT
Ga0194128_100274614	F001129	N/A	MATPILQQMLGSGGSMQFIDAAVTGANFDFLVVNSAATLSVLTGTNSENLLTAYSLSGKSVAAGIVISGRNGGKITAVTPTAGSVIGYTFL
Ga0194128_100274617	F009057	N/A	MPTFRKYAFPSQATADKAMQSLQPLDNAVPLGEIDGLVCYDILFQDTAPAAFTPYIVWPAPLGVHSFLGWNEQYTKDYNEFGT
Ga0194128_100274619	F007748	AGG	VNLIEASLVGTISAVVGGAVAWLTRGKFQADSLQVKQAQAVLQMWQVTAEAQNKELVQLRNEIVSLRERIECMEETIHLLESENATLRNA