Scaffold Ga0194124_10467987

Overview

Basic Information

• Taxon OID: 3300020196
• Scaffold ID: Ga0194124_10467987
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 559
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018349	Metagenome / Metatranscriptome	235	Y
F042890	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194124_104679871	F018349	N/A	LKQIMSQQVTGGNMDYKEGFQDGVQFTREVVIANIRKWAETHEEGETLDWVADRIEFGILDNDLD
Ga0194124_104679873	F042890	AGGA	MGNRANFVFVDGAGDAIVLYGHWAGHQMLGKLADAVIAARPRWNDESYATRIAISN