Basic Information | |
---|---|
Taxon OID | 3300020196 Open in IMG/M |
Scaffold ID | Ga0194124_10069729 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2107 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -4.9054 | Long. (o) | 29.4853 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015066 | Metagenome / Metatranscriptome | 257 | Y |
F017290 | Metagenome / Metatranscriptome | 241 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194124_100697291 | F017290 | AGGAG | MATQVITGRDVSLSFSGGTDIEAQATNAVLTKVNERQTYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGIDAQTVSFTFTVSK |
Ga0194124_100697294 | F015066 | N/A | GTQATVAVTGEGSEFSSTDTTVTFQEDTIVKFAGANVVNVELFDRSDPAFAELLVRELAASYAQKTDQYASQIASQNASASTGASIYASIVDGISDSYGVMRFTPNRLLVAPSGGTNGIDFSGLLGAVFDSRPLFSAAAPQNAAGVITQGSTNGTVAGLDLVVSPNYTGDDANAKHALVYPSQAMRFHESGTVELRANIVANGRIEIGIYGYVCVVNRYPTAFRKLAVA |
⦗Top⦘ |