Scaffold Ga0181597_10075138

Overview

Basic Information

• Taxon OID: 3300020194
• Scaffold ID: Ga0181597_10075138
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1971
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018288	Metagenome	236	N
F069445	Metagenome	124	Y
F084115	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181597_100751381	F084115	N/A	KFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTAEDFKKDILQWVGERSDECYLDDDCQIRRYDERSA
Ga0181597_100751382	F018288	AGGAGG	MKDLLNLLDTFTEYEWKQAKKEMTKRIPSMEINKMSMDEFQTLARFLASPDFSDIDEYRRRLH
Ga0181597_100751383	F069445	AGGAGG	MKKEKWDGKSRPSNDTYRKNFNEIFGKKPEIDLKGTIFCKSKNCNNHLYKNESPNLKGYCLDCG