Scaffold Ga0181597_10004259

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181597_10004259

Scaffold Ga0181597_10004259

Overview

Basic Information
Taxon OID	3300020194 Open in IMG/M
Scaffold ID	Ga0181597_10004259 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14311
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181597_1000425915	F088821	N/A	MIDTSKLYSVSKDAVEDIVMKETRHPYYSVVLDRAKMMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDEEYRERLSRMKLFPLEQKFFSAQQRIYDENNVNRMYPENKDFWKWKETNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGSGNPVTDTDGNVVPYNFVVRPHEIWNFQVRQGALTLLVTRQMYYELDNVKKHKWTAYTPEYICVYIEENGKKQKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYCLKGMYLASSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFGDLMSLIFSMAQVRDKSIVKSNVSGSAKRFDNVEEQGLLASTAMDMEMIEMQVLRRMAKVRDENYEGYGVTYSKHYDLSSADEIFQDITEGMQYHAMSLPLIKKLTAEYMRKRSMPQEDIEEVMQHFNEYGMPKTATDLRNLVDILPQEELQRQAQVGIETQSEQ
Ga0181597_1000425918	F060872	GAGG	MDFLSYKLGYEMSEETDDPTRKAYKHFDGYNHYPDGNLTALDYDSGHPVWLCADFNRSPHCWALLQVKKARNGLKQYVIFDEIFSKEALTTEQALKAVELLNKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDENDISYKNELDIQNPKRKVRVDKVNNVIYAGTNGERRLLVNTRCEHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGNASPMYVLR

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