Scaffold Ga0194131_10033692

Overview

Basic Information

• Taxon OID: 3300020193
• Scaffold ID: Ga0194131_10033692
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4067
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009072	Metagenome / Metatranscriptome	323	Y
F010017	Metagenome / Metatranscriptome	309	Y
F012110	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194131_100336921	F009072	N/A	KYGNEDYFSVIEINTGRKICDCSDEMDALMMVSFSPKNRTITKNKFMMGQVIDIEVPKALPTNEIVIDTRKYKQHQEEWMVEKINPLSQIKLPEGEGKPVKV
Ga0194131_1003369210	F012110	N/A	MTKALLLLAWVPLLSFSTSQLISTEHPVTISCDAAWELMDIVKNDDVVNQRVEDRLLLELRKDFVNKC
Ga0194131_100336922	F010017	AGGA	MNHRKYKKEKNSKKKRMYTPDGYIADPPNSKCPYCGKEKKPCSYLNSLSRAWSRQACKIKMKSG