Scaffold Ga0194131_10023667

Overview

Basic Information

• Taxon OID: 3300020193
• Scaffold ID: Ga0194131_10023667
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5619
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194131_1002366720	F013631	AGGAG	MTVLDVFHYTASRWDWHDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDTSMVMSEPRCYADTLNWVRMFCGSFSILPEYSVAV
Ga0194131_100236675	F053990	AGGAGG	MIDTCILHDDYEDFAQKYLGIDYEDYVNLQLGLDDEDEIEVEHPIGA
Ga0194131_100236676	F073458	N/A	MSAKLIEFATEIIDTNPAGSQLIVNLVKAETGADILEALDNYDSTVLENHTQPVDSEDEGYVSFTDADGTVTYV
Ga0194131_100236677	F093764	N/A	MARRNKSASRQMVENLQDQLVEYFQENVFDDCDYEDMTGSDLLEALVGTFRELESEIQKKLNPLQFVLNKLDPEDSETQVLNG