Scaffold Ga0194131_10015724

Overview

Basic Information

• Taxon OID: 3300020193
• Scaffold ID: Ga0194131_10015724
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8135
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027449	Metagenome / Metatranscriptome	194	Y
F052590	Metagenome / Metatranscriptome	142	Y
F060903	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194131_1001572410	F060903	GGA	MGNWTEELTDEQKKQVWDFIVFTVKEIREQIALDVEYTYEVWATHGKAKSRQTKKAFMVCADIARGLNERISDAKEQ
Ga0194131_1001572420	F027449	AGGA	MYTDAMRRAFHNIKAPSNFKISLVDNEHFLAIKLDERSFLPLTHDEKIDAVKYIAIVKKALEMEGAIVLVTREPLQ
Ga0194131_1001572423	F052590	AGGAG	MIISNLKKMEKIVSKNNNLSWIGWDVADRKRSEAGRTSPSGVRVKGVWYLQRVYPVNRNGWDVPNKYRG