Scaffold Ga0194131_10011673

Overview

Basic Information

• Taxon OID: 3300020193
• Scaffold ID: Ga0194131_10011673
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10419
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F023809	Metagenome / Metatranscriptome	208	Y
F072274	Metagenome / Metatranscriptome	121	Y
F099175	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194131_1001167332	F072274	N/A	MEEQIDGYISPDRMWAAVPYGKKYITIYNGEQICLHNTLETAKKFIQKNKKKGK
Ga0194131_1001167334	F099175	N/A	KKEQIEELKQFAEYLGVDFEDYLEYLHPDVDFDDYSR
Ga0194131_100116734	F000345	GGA	MTEEQSKQPNDFGKAMQEWWDSDACKELQKSHKEAKERAVGKYFMLSEEDKLDMVEAICYIMCKSEKRGTSHRGLMDDLGIYPAGFWVDNLMDVHNALWTYYHDKKQEEELKQDIETLQNFTET
Ga0194131_100116736	F023809	N/A	MDTIQFLAPILGGLCFSNFMEKQGELCNVRQEPAPIVKYYEAGKSCYKNGIFYEKCENSPGVIY