Scaffold Ga0194131_10002718

Overview

Basic Information

• Taxon OID: 3300020193
• Scaffold ID: Ga0194131_10002718
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28767
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005346	Metagenome / Metatranscriptome	403	Y
F015312	Metagenome / Metatranscriptome	255	Y
F046259	Metagenome	151	Y
F093505	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194131_1000271812	F046259	AGGA	MFNANTEVGQVFVQTTDHRGHTVEEIAERAANRLLSVDNKEALHYWLVKYLREAQQAERQMIDKKLTQQGYLEIAQLIGDL
Ga0194131_1000271814	F015312	AGGGGG	MKNTSYNQPKPNTESTGRNGYPEKDVNKGVTHMKMKGAGAATKGTKFVSQINLENNAKYRAGWSP
Ga0194131_1000271815	F093505	AGGAG	MKDGTRKVAKEEVRRHEKSMHKMRAGGKTNSDMKKYGRGMAKVMNQRGR
Ga0194131_1000271834	F005346	GGA	MSYSNALEYLDSKLQEERTLIVETLIQGKLDEGEYKRLCGALQGLDLAKNHIKDLAKRIEEE