NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10001943

Scaffold Ga0194131_10001943


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10001943 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34531
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (57.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F012571Metagenome279Y
F026542Metagenome / Metatranscriptome197Y
F071221Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_1000194326F012571N/AMTNNINNPDDVIGTCSECKSDQPMQYMYNSPFAQAGKPVPCKYCGGVVIITYRETRDEALDNADTERGL
Ga0194131_1000194328F004789GGAMTISGTYQNPATKPCWAYCLSCSRCQDKGRYTKCNGCSGRYDPRGKIDVNNDDFCDCKNGILRWKTKNGKLLITKFNSNPFKGTVKYQKQSQDEADWDSYVNDMREKMDDPNFNPITIYE
Ga0194131_1000194337F026542N/AMNLQNIEKLQSLLSDFLNPQIQEVINSYVNNSKDNIYFIEIPEEEVVDLGLDKLASLVARTSNVYGRSARFAGMARANYKLIEGKYKKVYKSSRVGKNEAEREATAMEAAEAEYSALITCEAIVSLAESLEGSARIASESARKLMDKVQSMQIASSRESKGYYLDEDFKTY
Ga0194131_1000194341F007028AGTAGMPKISKNAFEQSTDSPLGSMVNVNPGISISTSPVLICGVNRKINIGNFENIDVYAGISLPLSNVSLEDKEALQAAIEDAAAYGFSIVSKETGDRYVLIKESQQGK
Ga0194131_100019439F071221AGGAGMATFYVGPRPVLRGRSTSEMVNVFKGTAGTYSFYPLFAKGILDGAPDNHHVPGTGYYPGNVLLSQLFNNSTLYAGTTPLAGTFANGAQYSGARFDPLQFKGLVGAAAFPANYRPCR
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